HL_5TBW_117

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

5TBW|1|AR|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_117 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.0565

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5TBW|1|AR|U|194
5TBW|1|AR|U|195
5TBW|1|AR|G|196
5TBW|1|AR|G|197
5TBW|1|AR|A|198
5TBW|1|AR|A|199
5TBW|1|AR|C|200
5TBW|1|AR|A|201

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CF

60S ribosomal protein L4-A

Chain DA

60S ribosomal protein L26-A

Chain DG

60S ribosomal protein L32