HL_5TBW_148

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGUAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_148 not in the Motif Atlas

Homologous match to HL_5TBW_036

Geometric discrepancy: 0.0569

The information below is about HL_5TBW_036

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5TBW|1|AR|G|1634
5TBW|1|AR|G|1635
5TBW|1|AR|U|1636
5TBW|1|AR|A|1637
5TBW|1|AR|A|1638
5TBW|1|AR|C|1639

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L27-A

Chain DI

60S ribosomal protein L34-A