HL_5TBW_155

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5TBW|1|AR|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_155 not in the Motif Atlas

Geometric match to HL_4V9F_044

Geometric discrepancy: 0.0688

The information below is about HL_4V9F_044

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5TBW|1|AR|C|1923
5TBW|1|AR|U|1924
5TBW|1|AR|U|1925
5TBW|1|AR|C|1926
5TBW|1|AR|G|1927
5TBW|1|AR|G|1928

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DP

60S ribosomal protein L41-A

Chain DR

60S ribosomal protein L43-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA