HL_5TBW_187

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UUGCAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_187 not in the Motif Atlas

Geometric match to HL_5TBW_074

Geometric discrepancy: 0.1066

The information below is about HL_5TBW_074

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

5TBW|1|AT|U|73
5TBW|1|AT|U|74
5TBW|1|AT|G|75
5TBW|1|AT|C|76
5TBW|1|AT|A|77
5TBW|1|AT|G|78

Current chains

Chain AT

5.8S ribosomal RNA

Nearby chains

Chain DA

60S ribosomal protein L26-A

Chain DJ

60S ribosomal protein L35-A

Chain DN

60S ribosomal protein L39