HL_5TBW_199

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

5TBW|1|sR|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_199 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.0668

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5TBW|1|sR|C|414
5TBW|1|sR|C|415
5TBW|1|sR|A|416
5TBW|1|sR|A|417
5TBW|1|sR|G|418
5TBW|1|sR|G|419

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain CX

60S ribosomal protein L23-A

Chain s6

40S ribosomal protein S6-A