HL_5TBW_202

3D structure

PDB id

5TBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TBW_202 not in the Motif Atlas

Homologous match to HL_4V88_199

Geometric discrepancy: 0.058

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

5TBW|1|sR|A|520
5TBW|1|sR|A|521
5TBW|1|sR|U|522
5TBW|1|sR|G|523
5TBW|1|sR|U|524
5TBW|1|sR|A|525
5TBW|1|sR|A|526
5TBW|1|sR|A|527
5TBW|1|sR|U|528
5TBW|1|sR|A|529
5TBW|1|sR|C|530
5TBW|1|sR|C|531
5TBW|1|sR|U|532

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A