HL_5TBW_229
3D structure
- PDB id
- 5TBW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of chlorolissoclimide bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TBW_229 not in the Motif Atlas
- Homologous match to HL_8P9A_183
- Geometric discrepancy: 0.0793
- The information below is about HL_8P9A_183
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13971.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5TBW|1|3|U|32
5TBW|1|3|U|33
5TBW|1|3|C|34
5TBW|1|3|C|35
5TBW|1|3|C|36
5TBW|1|3|G|37
5TBW|1|3|U|38
5TBW|1|3|C|39
5TBW|1|3|C|40
5TBW|1|3|G|41
5TBW|1|3|A|42
5TBW|1|3|U|43
5TBW|1|3|C|44
5TBW|1|3|A|45
Current chains
- Chain 3
- 5S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain i
- Suppressor protein STM1
- Chain m
- 60S ribosomal protein L5
- Chain s
- 60S ribosomal protein L11-B
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