HL_5TGA_085

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGCCCAUUCGGGUCU

Length

16 nucleotides

Bulged bases

5TGA|1|2|C|495

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGA|1|2|G|486
5TGA|1|2|G|487
5TGA|1|2|G|488
5TGA|1|2|C|489
5TGA|1|2|C|490
5TGA|1|2|C|491
5TGA|1|2|A|492
5TGA|1|2|U|493
5TGA|1|2|U|494
5TGA|1|2|C|495
5TGA|1|2|G|496
5TGA|1|2|G|497
5TGA|1|2|G|498
5TGA|1|2|U|499
5TGA|1|2|C|500
5TGA|1|2|U|501

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A