HL_5TGA_088

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5TGA|1|2|U|718, 5TGA|1|2|U|719, 5TGA|1|2|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGA|1|2|G|703
5TGA|1|2|C|704
5TGA|1|2|U|705
5TGA|1|2|A|706
5TGA|1|2|A|707
5TGA|1|2|C|708
5TGA|1|2|C|709
5TGA|1|2|U|710
5TGA|1|2|U|711
5TGA|1|2|G|712
5TGA|1|2|A|713
5TGA|1|2|G|714
5TGA|1|2|U|715
5TGA|1|2|C|716
5TGA|1|2|C|717
5TGA|1|2|U|718
5TGA|1|2|U|719
5TGA|1|2|G|720
5TGA|1|2|U|721
5TGA|1|2|G|722
5TGA|1|2|G|723
5TGA|1|2|C|724
5TGA|1|2|U|725
5TGA|1|2|C|726
5TGA|1|2|U|727
5TGA|1|2|U|728
5TGA|1|2|G|729
5TGA|1|2|G|730
5TGA|1|2|C|731
5TGA|1|2|G|732
5TGA|1|2|A|733
5TGA|1|2|A|734
5TGA|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A