HL_5TGA_119

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

5TGA|1|5|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGA_119 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.0721

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

5TGA|1|5|U|194
5TGA|1|5|U|195
5TGA|1|5|G|196
5TGA|1|5|G|197
5TGA|1|5|A|198
5TGA|1|5|A|199
5TGA|1|5|C|200
5TGA|1|5|A|201

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l4

60S ribosomal protein L4-A

Chain n6

60S ribosomal protein L26-A

Chain o2

60S ribosomal protein L32