HL_5TGA_161
3D structure
- PDB id
- 5TGA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAAAGU
- Length
- 7 nucleotides
- Bulged bases
- 5TGA|1|5|G|2169
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TGA_161 not in the Motif Atlas
- Homologous match to HL_8C3A_047
- Geometric discrepancy: 0.0701
- The information below is about HL_8C3A_047
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
5TGA|1|5|A|2164
5TGA|1|5|G|2165
5TGA|1|5|A|2166
5TGA|1|5|A|2167
5TGA|1|5|A|2168
5TGA|1|5|G|2169
5TGA|1|5|U|2170
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain l8
- 60S ribosomal protein L8-A
- Chain m5
- 60S ribosomal protein L15-A
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