HL_5TGA_238

3D structure

PDB id

5TGA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAGAGAAGGGGGCAACUCCAUCUCAG

Length

26 nucleotides

Bulged bases

5TGA|1|6|C|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGA|1|6|U|1688
5TGA|1|6|A|1689
5TGA|1|6|G|1690
5TGA|1|6|A|1691
5TGA|1|6|G|1692
5TGA|1|6|A|1693
5TGA|1|6|A|1694
5TGA|1|6|G|1695
5TGA|1|6|G|1696
5TGA|1|6|G|1697
5TGA|1|6|G|1698
5TGA|1|6|G|1699
5TGA|1|6|C|1700
5TGA|1|6|A|1701
5TGA|1|6|A|1702
5TGA|1|6|C|1703
5TGA|1|6|U|1704
5TGA|1|6|C|1705
5TGA|1|6|C|1706
5TGA|1|6|A|1707
5TGA|1|6|U|1708
5TGA|1|6|C|1709
5TGA|1|6|U|1710
5TGA|1|6|C|1711
5TGA|1|6|A|1712
5TGA|1|6|G|1713

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A