HL_5TGM_089

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCUAACCUUGAGUCCUUGUGGCUCUUGGCGAAC

Length

33 nucleotides

Bulged bases

5TGM|1|2|U|702, 5TGM|1|2|U|704

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|G|686
5TGM|1|2|C|687
5TGM|1|2|U|688
5TGM|1|2|A|689
5TGM|1|2|A|690
5TGM|1|2|C|691
5TGM|1|2|C|692
5TGM|1|2|U|693
5TGM|1|2|U|694
5TGM|1|2|G|695
5TGM|1|2|A|696
5TGM|1|2|G|697
5TGM|1|2|U|698
5TGM|1|2|C|699
5TGM|1|2|C|700
5TGM|1|2|U|701
5TGM|1|2|U|702
5TGM|1|2|G|703
5TGM|1|2|U|704
5TGM|1|2|G|705
5TGM|1|2|G|706
5TGM|1|2|C|707
5TGM|1|2|U|708
5TGM|1|2|C|709
5TGM|1|2|U|710
5TGM|1|2|U|711
5TGM|1|2|G|712
5TGM|1|2|G|713
5TGM|1|2|C|714
5TGM|1|2|G|715
5TGM|1|2|A|716
5TGM|1|2|A|717
5TGM|1|2|C|718

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A