HL_5TGM_101

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_101 not in the Motif Atlas

Homologous match to HL_4V88_214

Geometric discrepancy: 0.102

The information below is about HL_4V88_214

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

5TGM|1|2|A|1279
5TGM|1|2|G|1280
5TGM|1|2|U|1281
5TGM|1|2|G|1282
5TGM|1|2|A|1283
5TGM|1|2|U|1284

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S0

40S ribosomal protein S0-A

Chain S2

40S ribosomal protein S2