HL_5TGM_110

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

5TGM|1|2|G|1795

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|A|1787
5TGM|1|2|G|1788
5TGM|1|2|A|1789
5TGM|1|2|A|1790
5TGM|1|2|G|1791
5TGM|1|2|G|1792
5TGM|1|2|G|1793
5TGM|1|2|G|1794
5TGM|1|2|G|1795
5TGM|1|2|C|1796
5TGM|1|2|A|1797
5TGM|1|2|A|1798
5TGM|1|2|C|1799
5TGM|1|2|U|1800
5TGM|1|2|C|1801
5TGM|1|2|C|1802
5TGM|1|2|A|1803
5TGM|1|2|U|1804
5TGM|1|2|C|1805
5TGM|1|2|U|1806

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain N4

60S ribosomal protein L24-A

Chain S6

40S ribosomal protein S6-A