HL_5TGM_127

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUCGG

Length

6 nucleotides

Bulged bases

5TGM|1|5|U|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_127 not in the Motif Atlas

Geometric match to HL_1U1Y_001

Geometric discrepancy: 0.2826

The information below is about HL_1U1Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

5TGM|1|5|C|543
5TGM|1|5|C|544
5TGM|1|5|U|545
5TGM|1|5|C|546
5TGM|1|5|G|547
5TGM|1|5|G|548

Current chains

Chain 5

25S ribosomal RNA

Nearby chains