HL_5TGM_149

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUGAUUUUAUGCAGG

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|5|C|1562
5TGM|1|5|C|1563
5TGM|1|5|U|1564
5TGM|1|5|G|1565
5TGM|1|5|A|1566
5TGM|1|5|U|1567
5TGM|1|5|U|1568
5TGM|1|5|U|1569
5TGM|1|5|U|1570
5TGM|1|5|A|1571
5TGM|1|5|U|1572
5TGM|1|5|G|1573
5TGM|1|5|C|1574
5TGM|1|5|A|1575
5TGM|1|5|G|1576
5TGM|1|5|G|1577

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain l8

60S ribosomal protein L8-A,60S Ribosomal Protein L8

Chain n5

60S ribosomal protein L25