HL_5TGM_170
3D structure
- PDB id
- 5TGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5TGM|1|5|G|2618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5TGM_170 not in the Motif Atlas
- Homologous match to HL_5TBW_054
- Geometric discrepancy: 0.141
- The information below is about HL_5TBW_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47383.2
- Basepair signature
- cWW-F-F-cWW-F-F
- Number of instances in this motif group
- 11
Unit IDs
5TGM|1|5|C|2616
5TGM|1|5|U|2617
5TGM|1|5|G|2618
5TGM|1|5|G|2619
5TGM|1|5|G|2620
5TGM|1|5|G|2621
5TGM|1|5|C|2622
5TGM|1|5|G|2623
5TGM|1|5|G|2624
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain m0
- 60S ribosomal protein L10
- Chain n9
- 60S ribosomal protein L29
- Chain p
- Peptidyl-tRNA analog ACCA-Leu-Phe
Coloring options: