HL_5TGM_203

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCCGAUUUUUUCGUAC

Length

17 nucleotides

Bulged bases

5TGM|1|6|G|660, 5TGM|1|6|U|667

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_203 not in the Motif Atlas

Geometric match to HL_7A0S_011

Geometric discrepancy: 0.3206

The information below is about HL_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5TGM|1|6|G|656
5TGM|1|6|U|657
5TGM|1|6|C|658
5TGM|1|6|C|659
5TGM|1|6|G|660
5TGM|1|6|A|661
5TGM|1|6|U|662
5TGM|1|6|U|663
5TGM|1|6|U|664
5TGM|1|6|U|665
5TGM|1|6|U|666
5TGM|1|6|U|667
5TGM|1|6|C|668
5TGM|1|6|G|669
5TGM|1|6|U|670
5TGM|1|6|A|673
5TGM|1|6|C|674

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d1

40S ribosomal protein S21-A

Chain s2

40S ribosomal protein S2

Chain s9

40S ribosomal protein S9-A