HL_5TGM_235

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGCGUAUUGCU

Length

11 nucleotides

Bulged bases

5TGM|1|2|U|762, 5TGM|1|2|U|764, 5TGM|1|2|U|765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|2|G|758
5TGM|1|2|G|759
5TGM|1|2|C|760
5TGM|1|2|G|761
5TGM|1|2|U|762
5TGM|1|2|A|763
5TGM|1|2|U|764
5TGM|1|2|U|765
5TGM|1|2|G|766
5TGM|1|2|C|767
5TGM|1|2|U|768

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D4

40S ribosomal protein S24-A

Chain S4

40S ribosomal protein S4-A