HL_5TGM_242

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

UAGAGAAGGGGGCAACUCCAUCUCAG

Length

26 nucleotides

Bulged bases

5TGM|1|6|C|1700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5TGM|1|6|U|1688
5TGM|1|6|A|1689
5TGM|1|6|G|1690
5TGM|1|6|A|1691
5TGM|1|6|G|1692
5TGM|1|6|A|1693
5TGM|1|6|A|1694
5TGM|1|6|G|1695
5TGM|1|6|G|1696
5TGM|1|6|G|1697
5TGM|1|6|G|1698
5TGM|1|6|G|1699
5TGM|1|6|C|1700
5TGM|1|6|A|1701
5TGM|1|6|A|1702
5TGM|1|6|C|1703
5TGM|1|6|U|1704
5TGM|1|6|C|1705
5TGM|1|6|C|1706
5TGM|1|6|A|1707
5TGM|1|6|U|1708
5TGM|1|6|C|1709
5TGM|1|6|U|1710
5TGM|1|6|C|1711
5TGM|1|6|A|1712
5TGM|1|6|G|1713

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain n4

60S ribosomal protein L24-A

Chain s6

40S ribosomal protein S6-A