HL_5TGM_250

3D structure

PDB id

5TGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the S.cerevisiae 80S ribosome in complex with the A-site bound aminoacyl-tRNA analog ACCA-Pro

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CCUUGUG

Length

7 nucleotides

Bulged bases

5TGM|1|6|C|717, 5TGM|1|6|U|718, 5TGM|1|6|U|719, 5TGM|1|6|U|721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5TGM_250 not in the Motif Atlas

Geometric match to HL_8CRE_038

Geometric discrepancy: 0.3477

The information below is about HL_8CRE_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5TGM|1|6|C|716
5TGM|1|6|C|717
5TGM|1|6|U|718
5TGM|1|6|U|719
5TGM|1|6|G|720
5TGM|1|6|U|721
5TGM|1|6|G|722

Current chains

Chain 6

18S ribosomal RNA

Nearby chains