3D structure

PDB id
5U3G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Dickeya dadantii ykkC riboswitch bound to guanidinium
Experimental method
X-RAY DIFFRACTION
Resolution
2.3 Å

Loop

Sequence
GAAAAAAGC
Length
9 nucleotides
Bulged bases (A, C, G, U)
70A, 75G
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_78614.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

5U3G|1|B|G|68
5U3G|1|B|A|69
5U3G|1|B|A|70
5U3G|1|B|A|71
5U3G|1|B|A|72
5U3G|1|B|A|73
5U3G|1|B|A|74
5U3G|1|B|G|75
5U3G|1|B|C|76

Current chains

Chain B
ykkC riboswitch

Nearby chains

No other chains within 10Å

Coloring options:

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