HL_5U9F_006

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5U9F|1|01|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.1258

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5U9F|1|01|G|194
5U9F|1|01|A|195
5U9F|1|01|A|196
5U9F|1|01|A|197
5U9F|1|01|C|198
5U9F|1|01|A|199
5U9F|1|01|U|200
5U9F|1|01|C|201

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 14

50S ribosomal protein L15

Chain 26

50S ribosomal protein L28

Chain X

Transfer RNA; tRNA