HL_5U9F_016

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

5U9F|1|01|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_016 not in the Motif Atlas

Homologous match to HL_5J7L_150

Geometric discrepancy: 0.1247

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5U9F|1|01|U|566
5U9F|1|01|U|567
5U9F|1|01|U|568
5U9F|1|01|U|569
5U9F|1|01|G|570
5U9F|1|01|U|571
5U9F|1|01|A|572
5U9F|1|01|U|573
5U9F|1|01|A|574
5U9F|1|01|A|575

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 14

50S ribosomal protein L15

Chain 19

50S ribosomal protein L20

Chain 20

50S ribosomal protein L21

Chain 30

50S ribosomal protein L32