HL_5U9F_032

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

5U9F|1|01|U|1325, 5U9F|1|01|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_032 not in the Motif Atlas

Homologous match to HL_5J7L_166

Geometric discrepancy: 0.2161

The information below is about HL_5J7L_166

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5U9F|1|01|G|1324
5U9F|1|01|U|1325
5U9F|1|01|U|1326
5U9F|1|01|A|1327
5U9F|1|01|A|1328
5U9F|1|01|U|1329
5U9F|1|01|C|1330

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 16

50S ribosomal protein L17

Chain 21

50S ribosomal protein L22