HL_5U9F_042

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

5U9F|1|01|C|1730, 5U9F|1|01|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_042 not in the Motif Atlas

Homologous match to HL_7A0S_043

Geometric discrepancy: 0.3514

The information below is about HL_7A0S_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5U9F|1|01|C|1727
5U9F|1|01|C|1728
5U9F|1|01|U|1729
5U9F|1|01|C|1730
5U9F|1|01|G|1731
5U9F|1|01|C|1732
5U9F|1|01|G|1733

Current chains

Chain 01

23S ribosomal RNA

Nearby chains