HL_5U9F_050
3D structure
- PDB id
- 5U9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- ACGCCAGU
- Length
- 8 nucleotides
- Bulged bases
- 5U9F|1|01|C|2145, 5U9F|1|01|C|2146, 5U9F|1|01|A|2147
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5U9F_050 not in the Motif Atlas
- Geometric match to HL_7EL1_002
- Geometric discrepancy: 0.3538
- The information below is about HL_7EL1_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_49922.4
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5U9F|1|01|A|2142
5U9F|1|01|C|2143
5U9F|1|01|G|2144
5U9F|1|01|C|2145
5U9F|1|01|C|2146
5U9F|1|01|A|2147
5U9F|1|01|G|2148
5U9F|1|01|U|2149
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain K
- 30S ribosomal protein S11
- Chain X
- Transfer RNA; tRNA
Coloring options: