3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGGGGCGG
Length
9 nucleotides
Bulged bases
5U9F|1|01|G|2250
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5U9F_052 not in the Motif Atlas
Homologous match to HL_7A0S_052
Geometric discrepancy: 0.1229
The information below is about HL_7A0S_052
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_85367.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

5U9F|1|01|C|2248
5U9F|1|01|U|2249
5U9F|1|01|G|2250
5U9F|1|01|G|2251
5U9F|1|01|G|2252
5U9F|1|01|G|2253
5U9F|1|01|C|2254
5U9F|1|01|G|2255
5U9F|1|01|G|2256

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 15
50S ribosomal protein L16
Chain 25
50S ribosomal protein L27
Chain W
Transfer RNA; tRNA

Coloring options:


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