HL_5U9F_065

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5U9F|1|01|G|2751, 5U9F|1|01|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.115

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5U9F|1|01|C|2745
5U9F|1|01|U|2746
5U9F|1|01|G|2747
5U9F|1|01|A|2748
5U9F|1|01|A|2749
5U9F|1|01|A|2750
5U9F|1|01|G|2751
5U9F|1|01|C|2752
5U9F|1|01|A|2753
5U9F|1|01|U|2754
5U9F|1|01|C|2755
5U9F|1|01|U|2756
5U9F|1|01|A|2757
5U9F|1|01|A|2758
5U9F|1|01|G|2759

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 12

50S ribosomal protein L13

Chain 34

50S ribosomal protein L36