3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CCUUCGGG
Length
8 nucleotides
Bulged bases
5U9F|1|A|U|209
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5U9F_075 not in the Motif Atlas
Geometric match to HL_4YAZ_004
Geometric discrepancy: 0.3365
The information below is about HL_4YAZ_004
Detailed Annotation
Mini UNCG
Broad Annotation
No text annotation
Motif group
HL_90436.1
Basepair signature
cWW-F
Number of instances in this motif group
37

Unit IDs

5U9F|1|A|C|206
5U9F|1|A|C|207
5U9F|1|A|U|208
5U9F|1|A|U|209
5U9F|1|A|C|210
5U9F|1|A|G|211
5U9F|1|A|G|212
5U9F|1|A|G|213

Current chains

Chain A
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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