HL_5U9F_082

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5U9F|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2494

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5U9F|1|A|G|462
5U9F|1|A|U|463
5U9F|1|A|U|464
5U9F|1|A|A|465
5U9F|1|A|A|466
5U9F|1|A|U|467
5U9F|1|A|A|468
5U9F|1|A|C|469
5U9F|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains