HL_5U9F_098

3D structure

PDB id

5U9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9F_098 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.175

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5U9F|1|A|C|1314
5U9F|1|A|U|1315
5U9F|1|A|G|1316
5U9F|1|A|C|1317
5U9F|1|A|A|1318
5U9F|1|A|A|1319
5U9F|1|A|C|1320
5U9F|1|A|U|1321
5U9F|1|A|C|1322
5U9F|1|A|G|1323

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L31

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19