3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAGCCUGGUAG
Length
11 nucleotides
Bulged bases
5U9F|1|W|C|16, 5U9F|1|W|G|18, 5U9F|1|W|G|19, 5U9F|1|W|U|20
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5U9F_102 not in the Motif Atlas
Homologous match to HL_1QF6_001
Geometric discrepancy: 0.1503
The information below is about HL_1QF6_001
Detailed Annotation
tRNA D-loop
Broad Annotation
No text annotation
Motif group
HL_20811.4
Basepair signature
cWW-cWS-F
Number of instances in this motif group
14

Unit IDs

5U9F|1|W|C|13
5U9F|1|W|A|14
5U9F|1|W|G|15
5U9F|1|W|C|16
5U9F|1|W|C|17
5U9F|1|W|U|17|||A
5U9F|1|W|G|18
5U9F|1|W|G|19
5U9F|1|W|U|20
5U9F|1|W|A|21
5U9F|1|W|G|22

Current chains

Chain W
fMet-tRNA (P- and E-site)

Nearby chains

Chain 01
Large subunit ribosomal RNA; LSU rRNA
Chain 07
50S ribosomal protein L5

Coloring options:


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