HL_5U9G_012
3D structure
- PDB id
- 5U9G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGACCAUC
- Length
- 8 nucleotides
- Bulged bases
- 5U9G|1|01|G|411
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5U9G_012 not in the Motif Atlas
- Homologous match to HL_5J7L_146
- Geometric discrepancy: 0.1232
- The information below is about HL_5J7L_146
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_30680.3
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
5U9G|1|01|G|410
5U9G|1|01|G|411
5U9G|1|01|A|412
5U9G|1|01|C|413
5U9G|1|01|C|414
5U9G|1|01|A|415
5U9G|1|01|U|416
5U9G|1|01|C|417
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 14
- 50S ribosomal protein L15
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