HL_5U9G_019
3D structure
- PDB id
- 5U9G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUUAACUGG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5U9G_019 not in the Motif Atlas
- Geometric match to HL_5J7L_012
- Geometric discrepancy: 0.3989
- The information below is about HL_5J7L_012
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_81538.2
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 16
Unit IDs
5U9G|1|01|C|640
5U9G|1|01|U|641
5U9G|1|01|U|642
5U9G|1|01|A|643
5U9G|1|01|A|644
5U9G|1|01|C|645
5U9G|1|01|U|646
5U9G|1|01|G|647
5U9G|1|01|G|648
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L33
- Chain 33
- 50S ribosomal protein L35
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