HL_5U9G_027

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5U9G|1|01|U|1066, 5U9G|1|01|A|1070, 5U9G|1|01|G|1071, 5U9G|1|01|C|1072

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9G_027 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3815

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5U9G|1|01|C|1064
5U9G|1|01|U|1065
5U9G|1|01|U|1066
5U9G|1|01|A|1067
5U9G|1|01|G|1068
5U9G|1|01|A|1069
5U9G|1|01|A|1070
5U9G|1|01|G|1071
5U9G|1|01|C|1072
5U9G|1|01|A|1073
5U9G|1|01|G|1074

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L11

Chain Z

Peptide chain release factor RF2