HL_5U9G_050

3D structure

PDB id

5U9G (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5U9G_050 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3503

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5U9G|1|01|A|2142
5U9G|1|01|C|2143
5U9G|1|01|G|2144
5U9G|1|01|C|2145
5U9G|1|01|C|2146
5U9G|1|01|A|2147
5U9G|1|01|G|2148
5U9G|1|01|U|2149

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11