HL_5UF3_008

3D structure

PDB id

5UF3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure Effects of the Four-Adenine Loop of the Coliphage GA Replicase RNA Operator

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAAAAC

Length

6 nucleotides

Bulged bases

5UF3|8|A|A|11

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UF3_008 not in the Motif Atlas

Geometric match to HL_6UFM_005

Geometric discrepancy: 0.359

The information below is about HL_6UFM_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12125.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5UF3|8|A|G|10
5UF3|8|A|A|11
5UF3|8|A|A|12
5UF3|8|A|A|13
5UF3|8|A|A|14
5UF3|8|A|C|15

Current chains

Chain A

phage GA operator RNA hairpin

Nearby chains