HL_5UQ7_010

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

5UQ7|1|A|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ7_010 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1269

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5UQ7|1|A|U|305
5UQ7|1|A|U|306
5UQ7|1|A|G|307
5UQ7|1|A|G|308
5UQ7|1|A|G|309
5UQ7|1|A|A|310
5UQ7|1|A|A|311
5UQ7|1|A|G|312

Current chains

Chain A

23S rRNA

Nearby chains

Chain Y

50S ribosomal protein L24