HL_5UQ7_029

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ7_029 not in the Motif Atlas

Homologous match to HL_7RQB_028

Geometric discrepancy: 0.1331

The information below is about HL_7RQB_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5UQ7|1|A|G|978
5UQ7|1|A|G|979
5UQ7|1|A|A|980
5UQ7|1|A|A|981
5UQ7|1|A|C|982
5UQ7|1|A|A|983
5UQ7|1|A|A|984
5UQ7|1|A|C|985

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain U

50S ribosomal protein L20