HL_5UQ7_081

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACUGAGACACGGG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ7_081 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.159

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5UQ7|1|a|C|320
5UQ7|1|a|A|321
5UQ7|1|a|C|322
5UQ7|1|a|U|323
5UQ7|1|a|G|324
5UQ7|1|a|A|325
5UQ7|1|a|G|326
5UQ7|1|a|A|327
5UQ7|1|a|C|328
5UQ7|1|a|A|329
5UQ7|1|a|C|330
5UQ7|1|a|G|331
5UQ7|1|a|G|332
5UQ7|1|a|G|333

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20