HL_5UQ7_112

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UQ7_112 not in the Motif Atlas

Homologous match to HL_4WJ4_003

Geometric discrepancy: 0.3287

The information below is about HL_4WJ4_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

5UQ7|1|z|G|53
5UQ7|1|z|U|54
5UQ7|1|z|U|55
5UQ7|1|z|C|56
5UQ7|1|z|G|57
5UQ7|1|z|A|58
5UQ7|1|z|U|59
5UQ7|1|z|U|60
5UQ7|1|z|C|61

Current chains

Chain z

E-site tRNA Phe

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain C

50S ribosomal protein L1