HL_5UYK_021

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUCGAAAAA

Length

10 nucleotides

Bulged bases

5UYK|1|01|C|747, 5UYK|1|01|A|751, 5UYK|1|01|A|752

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_021 not in the Motif Atlas

Homologous match to HL_4WF9_023

Geometric discrepancy: 0.1118

The information below is about HL_4WF9_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

5UYK|1|01|U|744
5UYK|1|01|G|745
5UYK|1|01|U|746
5UYK|1|01|C|747
5UYK|1|01|G|748
5UYK|1|01|A|749
5UYK|1|01|A|750
5UYK|1|01|A|751
5UYK|1|01|A|752
5UYK|1|01|A|753

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 21

50S ribosomal protein L22

Chain 30

50S ribosomal protein L32

Chain 32

50S ribosomal protein L34