HL_5UYK_022

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5UYK|1|01|A|781, 5UYK|1|01|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_022 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3065

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

5UYK|1|01|U|779
5UYK|1|01|G|780
5UYK|1|01|A|781
5UYK|1|01|A|782
5UYK|1|01|A|783
5UYK|1|01|G|784
5UYK|1|01|G|785

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2