HL_5UYK_035
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCGACGGUUGUC
- Length
- 12 nucleotides
- Bulged bases
- 5UYK|1|01|A|1453, 5UYK|1|01|C|1454, 5UYK|1|01|U|1460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYK_035 not in the Motif Atlas
- Geometric match to HL_5J7L_018
- Geometric discrepancy: 0.3295
- The information below is about HL_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37344.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5UYK|1|01|G|1450
5UYK|1|01|C|1451
5UYK|1|01|G|1452
5UYK|1|01|A|1453
5UYK|1|01|C|1454
5UYK|1|01|G|1455
5UYK|1|01|G|1456
5UYK|1|01|U|1457
5UYK|1|01|U|1458
5UYK|1|01|G|1459
5UYK|1|01|U|1460
5UYK|1|01|C|1461
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 16
- 50S ribosomal protein L17
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