HL_5UYK_057

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_057 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.1542

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5UYK|1|01|C|2374
5UYK|1|01|G|2375
5UYK|1|01|A|2376
5UYK|1|01|A|2377
5UYK|1|01|A|2378
5UYK|1|01|G|2379

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L18

Chain 25

50S ribosomal protein L27