HL_5UYK_082

3D structure

PDB id

5UYK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5UYK|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYK_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2033

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5UYK|1|A|G|462
5UYK|1|A|U|463
5UYK|1|A|U|464
5UYK|1|A|A|465
5UYK|1|A|A|466
5UYK|1|A|U|467
5UYK|1|A|A|468
5UYK|1|A|C|469
5UYK|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains