HL_5UYK_105
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 5UYK|1|X|C|16, 5UYK|1|X|G|18, 5UYK|1|X|G|19, 5UYK|1|X|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYK_105 not in the Motif Atlas
- Homologous match to HL_1QF6_001
- Geometric discrepancy: 0.1988
- The information below is about HL_1QF6_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
5UYK|1|X|C|13
5UYK|1|X|A|14
5UYK|1|X|G|15
5UYK|1|X|C|16
5UYK|1|X|C|17
5UYK|1|X|U|17|||A
5UYK|1|X|G|18
5UYK|1|X|G|19
5UYK|1|X|U|20
5UYK|1|X|A|21
5UYK|1|X|G|22
Current chains
- Chain X
- tRNAfMet
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 03
- 50S ribosomal protein L1
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