HL_5UYL_034

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5UYL|1|01|U|1396, 5UYL|1|01|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYL_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1601

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5UYL|1|01|G|1389
5UYL|1|01|U|1390
5UYL|1|01|U|1391
5UYL|1|01|A|1392
5UYL|1|01|A|1393
5UYL|1|01|U|1394
5UYL|1|01|A|1395
5UYL|1|01|U|1396
5UYL|1|01|U|1397
5UYL|1|01|C|1398

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23